How to integrate Clockify MCP with Mastra AI

This guide walks you through connecting Clockify to Mastra AI using the Composio tool router. By the end, you'll have a working Clockify agent that can list all your active workspaces, add a new client to marketing workspace, show all users on design team workspace through natural language commands. This guide will help you understand how to give your Mastra AI agent real control over a Clockify account through Composio's Clockify MCP server. Before we dive in, let's take a quick look at the key ideas and tools involved.

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Clockify is a free time tracking software for individuals and teams to monitor work hours across projects. Track, manage, and report time for better productivity and transparency.

73 Tools

Introduction

This guide walks you through connecting Clockify to Mastra AI using the Composio tool router. By the end, you'll have a working Clockify agent that can list all your active workspaces, add a new client to marketing workspace, show all users on design team workspace through natural language commands.

This guide will help you understand how to give your Mastra AI agent real control over a Clockify account through Composio's Clockify MCP server.

Before we dive in, let's take a quick look at the key ideas and tools involved.

Also integrate Clockify with

TL;DR

Here's what you'll learn:
  • Set up your environment so Mastra, OpenAI, and Composio work together
  • Create a Tool Router session in Composio that exposes Clockify tools
  • Connect Mastra's MCP client to the Composio generated MCP URL
  • Fetch Clockify tool definitions and attach them as a toolset
  • Build a Mastra agent that can reason, call tools, and return structured results
  • Run an interactive CLI where you can chat with your Clockify agent

What is Mastra AI?

Mastra AI is a TypeScript framework for building AI agents with tool support. It provides a clean API for creating agents that can use external services through MCP.

Key features include:

  • MCP Client: Built-in support for Model Context Protocol servers
  • Toolsets: Organize tools into logical groups
  • Step Callbacks: Monitor and debug agent execution
  • OpenAI Integration: Works with OpenAI models via @ai-sdk/openai

What is the Clockify MCP server, and what's possible with it?

The Clockify MCP server is an implementation of the Model Context Protocol that connects your AI agent and assistants like Claude, Cursor, etc directly to your Clockify account. It provides structured and secure access to your team's time tracking data, so your agent can perform actions like managing clients, handling workspace users, setting up webhooks, and retrieving workspace details on your behalf.

  • Workspace user management: Let your agent list all users in a workspace, filter users by advanced criteria, or find team managers for more efficient team organization.
  • Client creation and deletion: Easily create new clients or remove existing ones from your workspace, streamlining project onboarding and cleanup.
  • Webhook automation: Enable your agent to create, delete, and manage webhooks for real-time notifications and integrations with other tools.
  • Workspace overview and navigation: Retrieve a list of all workspaces you belong to, empowering your agent to access and organize time tracking across multiple teams or projects.
  • Addon and webhook token management: Generate new webhook tokens and list all addon webhooks, ensuring secure and automated integrations with third-party services.

What is the Composio tool router, and how does it fit here?

What is Composio SDK?

Composio's Composio SDK helps agents find the right tools for a task at runtime. You can plug in multiple toolkits (like Gmail, HubSpot, and GitHub), and the agent will identify the relevant app and action to complete multi-step workflows. This can reduce token usage and improve the reliability of tool calls. Read more here: Getting started with Composio SDK

The tool router generates a secure MCP URL that your agents can access to perform actions.

How the Composio SDK works

The Composio SDK follows a three-phase workflow:

  1. Discovery: Searches for tools matching your task and returns relevant toolkits with their details.
  2. Authentication: Checks for active connections. If missing, creates an auth config and returns a connection URL via Auth Link.
  3. Execution: Executes the action using the authenticated connection.

Step-by-step Guide

Step by step09 STEPS
1

Prerequisites

Before starting, make sure you have:
  • Node.js 18 or higher
  • A Composio account with an active API key
  • An OpenAI API key
  • Basic familiarity with TypeScript
2

Getting API Keys for OpenAI and Composio

OpenAI API Key
  • Go to the OpenAI dashboard and create an API key.
  • You need credits or a connected billing setup to use the models.
  • Store the key somewhere safe.
Composio API Key
  • Log in to the Composio dashboard.
  • Go to Settings and copy your API key.
  • This key lets your Mastra agent talk to Composio and reach Clockify through MCP.
3

Install dependencies

bash
npm install @composio/core @mastra/core @mastra/mcp @ai-sdk/openai dotenv

Install the required packages.

What's happening:

  • @composio/core is the Composio SDK for creating MCP sessions
  • @mastra/core provides the Agent class
  • @mastra/mcp is Mastra's MCP client
  • @ai-sdk/openai is the model wrapper for OpenAI
  • dotenv loads environment variables from .env
4

Set up environment variables

bash
COMPOSIO_API_KEY=your_composio_api_key_here
COMPOSIO_USER_ID=your_user_id_here
OPENAI_API_KEY=your_openai_api_key_here

Create a .env file in your project root.

What's happening:

  • COMPOSIO_API_KEY authenticates your requests to Composio
  • COMPOSIO_USER_ID tells Composio which user this session belongs to
  • OPENAI_API_KEY lets the Mastra agent call OpenAI models
5

Import libraries and validate environment

typescript
import "dotenv/config";
import { openai } from "@ai-sdk/openai";
import { Agent } from "@mastra/core/agent";
import { MCPClient } from "@mastra/mcp";
import { Composio } from "@composio/core";
import * as readline from "readline";

import type { AiMessageType } from "@mastra/core/agent";

const openaiAPIKey = process.env.OPENAI_API_KEY;
const composioAPIKey = process.env.COMPOSIO_API_KEY;
const composioUserID = process.env.COMPOSIO_USER_ID;

if (!openaiAPIKey) throw new Error("OPENAI_API_KEY is not set");
if (!composioAPIKey) throw new Error("COMPOSIO_API_KEY is not set");
if (!composioUserID) throw new Error("COMPOSIO_USER_ID is not set");

const composio = new Composio({
  apiKey: composioAPIKey as string,
});
What's happening:
  • dotenv/config auto loads your .env so process.env.* is available
  • openai gives you a Mastra compatible model wrapper
  • Agent is the Mastra agent that will call tools and produce answers
  • MCPClient connects Mastra to your Composio MCP server
  • Composio is used to create a Tool Router session
6

Create a Tool Router session for Clockify

typescript
async function main() {
  const session = await composio.create(
    composioUserID as string,
    {
      toolkits: ["clockify"],
    },
  );

  const composioMCPUrl = session.mcp.url;
  console.log("Clockify MCP URL:", composioMCPUrl);
What's happening:
  • create spins up a short-lived MCP HTTP endpoint for this user
  • The toolkits array contains "clockify" for Clockify access
  • session.mcp.url is the MCP URL that Mastra's MCPClient will connect to
7

Configure Mastra MCP client and fetch tools

typescript
const mcpClient = new MCPClient({
    id: composioUserID as string,
    servers: {
      nasdaq: {
        url: new URL(composioMCPUrl),
        requestInit: {
          headers: session.mcp.headers,
        },
      },
    },
    timeout: 30_000,
  });

console.log("Fetching MCP tools from Composio...");
const composioTools = await mcpClient.getTools();
console.log("Number of tools:", Object.keys(composioTools).length);
What's happening:
  • MCPClient takes an id for this client and a list of MCP servers
  • The headers property includes the x-api-key for authentication
  • getTools fetches the tool definitions exposed by the Clockify toolkit
8

Create the Mastra agent

typescript
const agent = new Agent({
    name: "clockify-mastra-agent",
    instructions: "You are an AI agent with Clockify tools via Composio.",
    model: "openai/gpt-5",
  });
What's happening:
  • Agent is the core Mastra agent
  • name is just an identifier for logging and debugging
  • instructions guide the agent to use tools instead of only answering in natural language
  • model uses openai("gpt-5") to configure the underlying LLM
9

Set up interactive chat interface

typescript
let messages: AiMessageType[] = [];

console.log("Chat started! Type 'exit' or 'quit' to end.\n");

const rl = readline.createInterface({
  input: process.stdin,
  output: process.stdout,
  prompt: "> ",
});

rl.prompt();

rl.on("line", async (userInput: string) => {
  const trimmedInput = userInput.trim();

  if (["exit", "quit", "bye"].includes(trimmedInput.toLowerCase())) {
    console.log("\nGoodbye!");
    rl.close();
    process.exit(0);
  }

  if (!trimmedInput) {
    rl.prompt();
    return;
  }

  messages.push({
    id: crypto.randomUUID(),
    role: "user",
    content: trimmedInput,
  });

  console.log("\nAgent is thinking...\n");

  try {
    const response = await agent.generate(messages, {
      toolsets: {
        clockify: composioTools,
      },
      maxSteps: 8,
    });

    const { text } = response;

    if (text && text.trim().length > 0) {
      console.log(`Agent: ${text}\n`);
        messages.push({
          id: crypto.randomUUID(),
          role: "assistant",
          content: text,
        });
      }
    } catch (error) {
      console.error("\nError:", error);
    }

    rl.prompt();
  });

  rl.on("close", async () => {
    console.log("\nSession ended.");
    await mcpClient.disconnect();
    process.exit(0);
  });
}

main().catch((err) => {
  console.error("Fatal error:", err);
  process.exit(1);
});
What's happening:
  • messages keeps the full conversation history in Mastra's expected format
  • agent.generate runs the agent with conversation history and Clockify toolsets
  • maxSteps limits how many tool calls the agent can take in a single run
  • onStepFinish is a hook that prints intermediate steps for debugging

Complete Code

Here's the complete code to get you started with Clockify and Mastra AI:

typescript
import "dotenv/config";
import { openai } from "@ai-sdk/openai";
import { Agent } from "@mastra/core/agent";
import { MCPClient } from "@mastra/mcp";
import { Composio } from "@composio/core";
import * as readline from "readline";

import type { AiMessageType } from "@mastra/core/agent";

const openaiAPIKey = process.env.OPENAI_API_KEY;
const composioAPIKey = process.env.COMPOSIO_API_KEY;
const composioUserID = process.env.COMPOSIO_USER_ID;

if (!openaiAPIKey) throw new Error("OPENAI_API_KEY is not set");
if (!composioAPIKey) throw new Error("COMPOSIO_API_KEY is not set");
if (!composioUserID) throw new Error("COMPOSIO_USER_ID is not set");

const composio = new Composio({ apiKey: composioAPIKey as string });

async function main() {
  const session = await composio.create(composioUserID as string, {
    toolkits: ["clockify"],
  });

  const composioMCPUrl = session.mcp.url;

  const mcpClient = new MCPClient({
    id: composioUserID as string,
    servers: {
      clockify: {
        url: new URL(composioMCPUrl),
        requestInit: {
          headers: session.mcp.headers,
        },
      },
    },
    timeout: 30_000,
  });

  const composioTools = await mcpClient.getTools();

  const agent = new Agent({
    name: "clockify-mastra-agent",
    instructions: "You are an AI agent with Clockify tools via Composio.",
    model: "openai/gpt-5",
  });

  let messages: AiMessageType[] = [];

  const rl = readline.createInterface({
    input: process.stdin,
    output: process.stdout,
    prompt: "> ",
  });

  rl.prompt();

  rl.on("line", async (input: string) => {
    const trimmed = input.trim();
    if (["exit", "quit"].includes(trimmed.toLowerCase())) {
      rl.close();
      return;
    }

    messages.push({ id: crypto.randomUUID(), role: "user", content: trimmed });

    const { text } = await agent.generate(messages, {
      toolsets: { clockify: composioTools },
      maxSteps: 8,
    });

    if (text) {
      console.log(`Agent: ${text}\n`);
      messages.push({ id: crypto.randomUUID(), role: "assistant", content: text });
    }

    rl.prompt();
  });

  rl.on("close", async () => {
    await mcpClient.disconnect();
    process.exit(0);
  });
}

main();

Conclusion

You've built a Mastra AI agent that can interact with Clockify through Composio's Tool Router. You can extend this further by:
  • Adding other toolkits like Gmail, Slack, or GitHub
  • Building a web-based chat interface around this agent
  • Using multiple MCP endpoints to enable cross-app workflows
TOOLS

Supported Tools

Every Clockify action and event your agent gets out of the box.

Add User to Group

Tool to add a user to a user group in a Clockify workspace.

Create Client

Tool to add a new client to a workspace.

Create New Project

Tool to create a new project in a Clockify workspace.

Create Shared Report

Tool to create a shared report in Clockify.

Create Task

Tool to add a new task to a project in Clockify.

Create Templates On Workspace

Tool to create templates on a Clockify workspace.

Create Time Entry

Tool to create a new time entry in a Clockify workspace.

Create User Group

Tool to create a new user group in a workspace.

Create User Time Entry

Tool to create a time entry for another user in a Clockify workspace.

Create Webhook

Tool to create a new webhook in a workspace.

Create Workspace

Tool to create a new workspace in Clockify.

Delete Client

Permanently deletes a client from a Clockify workspace.

Delete Project

Tool to delete a project from a workspace.

Delete Shared Report

Tool to delete a shared report from a workspace by ID.

Delete Tag

Tool to delete a tag from a Clockify workspace.

Delete Task

Tool to delete a task from a project in Clockify.

Delete Template

Tool to delete a template from a Clockify workspace.

Delete Time Entry

Tool to delete a time entry from a workspace by ID.

Delete User Group

Tool to delete a user group from a workspace.

Delete User Time Entries

Tool to delete multiple time entries for a user in a workspace.

Delete Webhook

Tool to delete a webhook from a workspace.

Duplicate Time Entry

Tool to duplicate an existing time entry in a Clockify workspace.

Filter Workspace Users

Tool to filter users in a workspace by advanced criteria.

Find User's Team Managers

Retrieves the list of team managers assigned to a specific user in a Clockify workspace.

Generate Detailed Report

Tool to generate a detailed time entry report with filtering and pagination.

Generate Expense Report

Tool to generate a detailed expense report for a Clockify workspace.

Generate New Webhook Token

Tool to generate a new webhook token.

Generate Summary Report

Tool to generate a summary report for time entries in a Clockify workspace.

Generate Weekly Report

Tool to generate a weekly time entry report for a workspace with grouped data.

Get All Addon Webhooks

Tool to list all webhooks for an addon in a workspace.

Get All My Workspaces

Tool to list all workspaces the user belongs to.

Get All Webhooks

Tool to list all webhooks in a workspace.

Get Client By ID

Retrieves detailed information about a specific client in a Clockify workspace.

Get Clients

Tool to list clients in a workspace.

Get Created Entities

Tool to retrieve created entities within a workspace (Experimental).

Get Currently Logged In User Info

Tool to retrieve info about the authenticated user.

Get Deleted Entities

Tool to retrieve information about entities deleted within a date range (Experimental API).

Get Holidays

Tool to retrieve all holidays for a workspace.

Get Holidays In Period

Tool to retrieve holidays in a specific period.

Get In Progress Time Entries

Tool to retrieve all currently running time entries in a workspace.

Get member's profile

Tool to get a member's profile in a workspace.

Get Project

Tool to retrieve detailed information about a specific project by ID.

Get Projects

Tool to list projects in a workspace with filtering and pagination.

Get Shared Report

Tool to retrieve a shared report by ID from Clockify.

Get Shared Reports

Tool to retrieve all shared reports in a workspace.

Get Tag By ID

Tool to retrieve detailed information about a specific tag by ID in a Clockify workspace.

Get Tags

Tool to find and list tags in a workspace.

Get Task

Retrieves detailed information about a specific task in a Clockify project.

Get Tasks

Tool to find all tasks on a specific project in a workspace.

Get Templates On Workspace

Tool to list all templates in a workspace.

Get Time Entries

Tool to retrieve historical time entries for a user in a workspace with filters.

Get Time Entry

Tool to retrieve a specific time entry by ID from a workspace.

Get Updated Entities

Tool to retrieve entities that have been updated in a workspace (Experimental).

Get User Groups

Tool to find all user groups in a workspace.

Get Webhook By ID

Retrieves detailed information about a specific webhook in a Clockify workspace.

Get Webhook Logs

Tool to retrieve webhook logs for a specific webhook.

Get Workspace Info

Retrieves detailed information about a specific Clockify workspace.

List Assignments

Tool to retrieve all scheduling assignments in a workspace.

Remove User From Group

Tool to remove a user from a group in Clockify.

Stop User Timer

Tool to stop a currently running timer for a user in a workspace.

Update Client

Tool to update an existing client in a Clockify workspace.

Update Project

Tool to update an existing project in a Clockify workspace.

Update Project Memberships

Tool to update project memberships in Clockify.

Update Project User Hourly Rate

Tool to update a project user's billable rate.

Update Shared Report

Tool to update an existing shared report in Clockify.

Update Tag

Tool to update a tag in a Clockify workspace.

Update Task

Tool to update an existing task on a project in Clockify.

Update Time Entries

Tool to bulk update multiple time entries in a Clockify workspace.

Update Time Entry

Tool to update an existing time entry in a Clockify workspace.

Update User Group

Tool to update an existing user group in a workspace.

Update User Hourly Rate

Tool to update a user's hourly rate in a Clockify workspace.

Update Webhook

Tool to update a webhook in a workspace.

Update Workspace Hourly Rate

Tool to update the workspace billable hourly rate.

FAQ

Frequently asked questions

With a standalone Clockify MCP server, the agents and LLMs can only access a fixed set of Clockify tools tied to that server. However, with the Composio Tool Router, agents can dynamically load tools from Clockify and many other apps based on the task at hand, all through a single MCP endpoint.

Yes, you can. Mastra AI fully supports MCP integration. You get structured tool calling, message history handling, and model orchestration while Tool Router takes care of discovering and serving the right Clockify tools.

Yes, absolutely. You can configure which Clockify scopes and actions are allowed when connecting your account to Composio. You can also bring your own OAuth credentials or API configuration so you keep full control over what the agent can do.

All sensitive data such as tokens, keys, and configuration is fully encrypted at rest and in transit. Composio is SOC 2 Type 2 compliant and follows strict security practices so your Clockify data and credentials are handled as safely as possible.

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